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	=Installation=		=Installation=
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	==A. Required Tools==		==A. Required Tools==

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Revision as of 20:32, 6 May 2013

Installation

Contents 1 Installation 1.1 A. Required Tools 1.2 B. PERL Requirement

A. Required Tools

The following tools are REQUIRED for FunSeq:
1) Bedtools
2) Samtools
3) Tabix
4) VAT - A good installation guide for VAT can be found here.

B. PERL Requirement

1) Please make sure you have Perl 5 and up. Latest PERL can be downloaded here.
2) Install package Parallel::ForkManager (this package is used for parallel running). The PERL library can be found here.