More tools
From GersteinInfo
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|style="width:15%; text-align:center;"|[http://yeasthub.gersteinlab.org '''Yeasthub --BROKEN URL--''']||style="width:7%; text-align:center;"|???||A semantic web-based application which demonstrates how a life sciences data warehouse can be built using a native Resource Description Framework (RDF) data store. This data warehouse allows integration of different types of yeast genome data provided by different resources in different formats including the tabular and RDF formats. | |style="width:15%; text-align:center;"|[http://yeasthub.gersteinlab.org '''Yeasthub --BROKEN URL--''']||style="width:7%; text-align:center;"|???||A semantic web-based application which demonstrates how a life sciences data warehouse can be built using a native Resource Description Framework (RDF) data store. This data warehouse allows integration of different types of yeast genome data provided by different resources in different formats including the tabular and RDF formats. | ||
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| + | |style="width:15%; text-align:center;"|[http://hub.gersteinlab.org/ir-supp/ '''HUB''']||style="width:7%; text-align:center;"|2001||A tool for leveraging the structure of the semantic web to enhance information retrieval for proteomics. This tool helps Proteomics researchers to be able to quickly retrieve relevant information from the web and the biomedical literature. | ||
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=Microarrays & Proteomics= | =Microarrays & Proteomics= | ||
Revision as of 21:29, 31 March 2014
Contents |
Tools portals
below is a list of more tool portals that the lab has developed.
Genecensus
Tool Name Release Date Description 
Genecensus1995-2014 we proposed a number of novel trees based on the occurrence of specific features, either folds or orthologs, throughout the whole genome. We call thesegenomic trees or whole-genome trees.
partslist.org
Tool Name Release Date Description 
partslist1995-2014 a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information
genometech
Tool Name Release Date Description 
genometech1995-2014 A central problem for 21st century science is annotating the human genome and making this annotation useful for the interpretation of personal genomes.
Network Tools
Tool Name Release Date Description Yeasthub --BROKEN URL-- ??? A semantic web-based application which demonstrates how a life sciences data warehouse can be built using a native Resource Description Framework (RDF) data store. This data warehouse allows integration of different types of yeast genome data provided by different resources in different formats including the tabular and RDF formats. HUB 2001 A tool for leveraging the structure of the semantic web to enhance information retrieval for proteomics. This tool helps Proteomics researchers to be able to quickly retrieve relevant information from the web and the biomedical literature.
Microarrays & Proteomics
Tool Name Release Date Description
ProCAT --BROKEN URL-- 2006 A data analysis approach for protein microarrays. ProCAT corrects for background bias and spatial artifacts, identifies significant signals, filters nonspecific spots, and normalizes the resulting signal to protein abundance. ProCAT provides a powerful and flexible new approach for analyzing many types of protein microarrays. Tilescope --BROKEN URL-- 2007 An online analysis pipeline for high-density tiling microarray data. Tilescope normalizes signals between channels and across arrays, combines replicate experiments, score each array element, and identifies genomic features. The program is designed with a modular, three-tiered architecture, facilitating parallelism, and a graphic user-friendly interface, presenting results in an organized web page, downloadable for further analysis. Tiling NA A platform with all our tilling array analysis tools.
