Hierarchy

(Difference between revisions)

Revision as of 12:45, 5 July 2010

by Nitin Bhardwaj, Philip M. Kim and Mark B. Gerstein

Please cite the above article if usage of the following date results in a publication.

The regulatory network for Yeast and E. coli.

**Properties of the regulatory networks used**
	Yeast	E. coli
Number of regulatory interactions	Cell 2	Cell 3
Number of Regulators	Cell B	Cell C
Number of Targets	Cell B	Cell C
Number of Inter-Regulator interactions	Cell B	Cell C

Assignment into hierarchies for Yeast and E. coli.

Changes in hierarchies:

Indirect Targets and Number of targets vs position in the hierarchy (in one of the four levels) for E. coli and Yeast.

Indirect targets

Effects of Overexpression

Fraction of toxic genes in Yeast

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-'''This is the information page for the article:
+'''
+== Information page for the article: ==
 by
-Nitin Bhardwaj, Philip Kim and MBG'''
+Nitin Bhardwaj, Philip M. Kim and Mark B. Gerstein'''
 Please cite the above article if usage of the following date results in a publication.
-'''Data:'''
+'''
+== Data: ==
+'''
 '''The regulatory network for [http://homes.gersteinlab.org/people/nbhardwaj/Human_TFs_with_Intensity.xls  Yeast] and [http://homes.gersteinlab.org/people/nbhardwaj/Human_TFs_with_Intensity.xls ''E. coli''].'''
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 {| border="1"
-|+ Properties of the regulatory networks used
+|+ '''Properties of the regulatory networks used'''
 ! !! Yeast !! ''E. coli''
 |-
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 | Cell C
 |}
+'''Assignment into hierarchies for Yeast and ''E. coli''.'''
+'''Changes in hierarchies:'''
+'''Indirect Targets and Number of targets vs position in the hierarchy (in one of the four levels) for ''E. coli'' and Yeast.'''
+[[File:Indirect.jpg|800px|thumb|center|Indirect targets]]
+'''Effects of Overexpression'''
+[[File:overexression.jpg|800px|thumb|center|Fraction of toxic genes in Yeast]]