| Alumni | Lab ID | Lab Dates | Other Info. (Affil., funding, etc.) | Current Position | Institution | Add Info | 
| Andrew Smith | AS | 2002 – 2007 | CS | industry | Bristol-Myers Squibb | Bioinformatics Developer, Bristol-Myers Squibb 311 Pennington-Rocky Hill Road Pennington, NJ | 
| Dov Greenbaum | DG | 1999 – 2004 | Genetics | adv degree | UC Berkeley, Stanford | Law Student, UC Berkeley; then Branco Weiss Fellow: Society in Science; Fellow Center for Law and the Biosciences, Stanford University | 
| Haiyuan Yu | HY | 2000 – 2005 | MB&B | -- | Cornell U | Assistant Professor | 
| Jiang Du | JDU | 2004 – 2010 | CS (jt. w. D McDermott) | industry | JP Morgan | 
| Michael Seringhaus | MS | 2001 – 2007 |  | adv degree | Alaska Supreme Court | Law Clerk to Justice Craig F. Stowers | 
| Paul Bertone | PB | 1998 – 2005 | MCDB (jt. with M Snyder) | faculty | EBI | Group Leader, EBI, Cambridge, UK | 
| Prianka Patel | PP | 2004 – 2010 | MB&B (jt. w. D Engelman) | -- | -- | 
| Rajdeep Das | RD | 1998 – 2004 | Chemistry | postdoc | CSHL | Post-Doc, CSHL; then Law Student | 
| Ronald Jansen | RJ | 1997 – 2002 | MB&B | industry | Goldman Sachs | Goldman Sachs, New York | 
| Samuel Flores | SF | 2004 – 2007 | Physics | postdoc | Stanford | Post-doc, Distinguished Simibios Fellow, Stanford University | 
| Tara Gianoulis | TG | 2003 – 2009 | CBB (jt. w. M Snyder) | postdoc | Harvard | Post-Doc, Church Lab, Harvard Med | 
| Ted Johnson | TJ | 1996 – 2003 | MB&B | -- | -- | 
| Thomas Royce | TR | 2002 – 2007 | CBB | industry | Illumina | Scientist, Illumina Inc, 9885 Towne Centre Drive, San Diego, CA 92121-1975 | 
| Vadim Alexandrov | VA | 1998 – 2003 |  | industry | -- | Bioinformatics Consulting | 
| William Grenawitzke | WG | 2006 – 2006 | Cellular & Molecular Physiology | -- | -- | 
| Werner Krebs | WK | 1996 – 2001 |  | postdoc | SDSC | Post-Doc at PDB at SDSC, Industry | 
| Hugo (Yu Kor) Lam | YHL | 2005 – ? | CBB | -- | -- | 
| Yuen-Jong Liu | YJL | 2004 – 2009 | Medical Student | -- | Harvard Medical School | Surgery Resident |